LibreOffice 6.0.6.2 (64-bit Windows 8.1)
Impress → Slide Show doesn’t allow for normal pen annotations, even when selecting “Mouse pointer as pen” in the settings nor during the presentation.
I can draw annotations (during a presentation) only by right-clicking a slide, selecting “Screen”->“White” or “Screen”->“Black”,and then drawing something. The drawing won’t be visible until returning to the slide.